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Prof. Dr. Martin Zacharias

Photo von Prof. Dr. Martin Zacharias.
Phone
+49 89 289-12335
Room
EG.046
E-Mail
zacharias@tum.de
Links
Homepage
Page in TUMonline
Group
Molecular Dynamics
Job Title
Professorship on Molecular Dynamics

Courses and Dates

Title and Module Assignment
ArtSWSLecturer(s)Dates
Biophysics
eLearning course
Assigned to modules:
VO 4 Bausch, A. Zacharias, M. Tue, 10:00–11:30, PH HS3
Tue, 12:30–14:00, PH HS3
Thu, 10:00–12:00, PH HS3
Thu, 14:00–16:00, PH HS3
Molecular Dynamics Simulations: from Principles to Application
eLearning course
Assigned to modules:
VO 2 Reif, M. Zacharias, M. Mon, 10:00–12:00, PH II 227
Bachelor's Seminar on Biophysics
Assigned to modules:
PS 2 Bausch, A. Zacharias, M. Fri, 14:00–15:30, CPA EG.006A
Seminar on current topics in molecular biophysics
Assigned to modules:
HS 2 Zacharias, M. singular or moved dates
Exercise to Molecular Dynamics Simulations: from Principles to Application
Assigned to modules:
UE 2 Reif, M.
Responsible/Coordination: Zacharias, M.
dates in groups
Biomolecular Systems
Assigned to modules:
SE 2 Gerland, U. Simmel, F. Zacharias, M.
FOPRA Experiment 74: Molecular Dynamics (AEP, BIO)
course documents current information
Assigned to modules:
PR 1 Chen, S.
Responsible/Coordination: Zacharias, M.
Mentor Counseling on the Focus Area in the Bachelor’s Program Physics (Biophysics [BIO])
current information
Assigned to modules:
OV 0.1 Simmel, F. Zacharias, M. singular or moved dates
Mentoring in the Bachelor’s Program Physics
Assigned to modules:
KO 0.2 Zacharias, M.

Offered Bachelor’s or Master’s Theses Topics

Berechnung der freien Energie der Ligand-Protein-Bindung

Mit Hilfe von Moleküldynamiksimulationen sollen freie Energien der Bindung von einem Liganden an ein Enzymmolekül berechnet werden. Der Ligand hemmt die Aktivität des Enzyms durch Bindung an die aktive Tasche des Enzyms. Durch Simulationsstudien kann der Einfluss einzelner chemischer Gruppen auf die Bindeaffinität (=Stärke der Bindung) des Liganden untersucht werden. Ziel der Simulationsstudien ist es, die Bedeutung einzelner chemischer Gruppen für die Bindeaffinität zu analysieren und mögliche Wege zu Erhöhung der Affinität aufzuzeigen.

suitable as
  • Bachelor’s Thesis Physics
Supervisor: Martin Zacharias
Refinement of protein-peptide complexes using replica exchange with repulsive scaling
The protein-peptide binding plays a major role for many cellular processes. The prediction how peptides interact with partner proteins is still an unsolved problem. In this BSc thesis a new method for improved sampling in Molecular Dynamics simulations will be used and tested on predicting the structure of protein-peptide complexes. The thesis gives important insights into molecular interactions but also in computer simulation methododologies.
suitable as
  • Bachelor’s Thesis Physics
Supervisor: Martin Zacharias
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