Theorie biologischer Netzwerke
Prof. Karen Alim
Forschungsgebiet
Mitarbeiterinnen und Mitarbeiter der Arbeitsgruppe
Professorin
Photo | Akad. Grad | Vorname | Nachname | Raum | Telefon | |
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Prof. Dr. | Karen | Alim | 036 | +49 89 289-12192 |
Sekretariat
Photo | Akad. Grad | Vorname | Nachname | Raum | Telefon | |
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Susanne Antoinette | Tillich | 209 | +49 89 289-12358 |
Wissenschaftlerinnen und Wissenschaftler
Photo | Akad. Grad | Vorname | Nachname | Raum | Telefon | |
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M.Sc. | Komal | Bhattacharyya | 034 | +49 89 289-12369 | ||
Dr. | Siyu | Chen | 038 | +49 89 289-51613 | ||
Dr. | Agnese | Codutti | 033 | +49 89 289-12193 | ||
M.Sc. | Joao Rafael | Diniz Ramos | 034 | +49 89 289-12369 | ||
Dr. | Florian | Goirand | 038 | +49 89 289-51613 | ||
M.Sc. | Mathias | Höfler | 035 | +49 89 289-14612 | ||
Dr. | Jean-Daniel | Julien | – | – | ||
Ph.D. | Mathieu | le Verge--Serandour | 035 | +49 89 289-14612 | ||
Dr. | Sophie | Marbach | – | – | ||
Dr. | Fatemeh | Mirzapour | 033 | +49 89 289-12193 | ||
Dr. | Gabriella | Mosca | – | +49 221 5062141 | ||
Dr. | Carsten | Rohr | – | +49 89 289-12343 | ||
M.Sc. | Lisa | Schick | 035 | +49 89 289-14612 | ||
M.Sc. | Nico | Schramma | – | – | ||
M.Sc. | Chun Lung | Tong | – | – | ||
M.Sc. | Lucas | Tröger | 038 | +49 89 289-51613 |
Studierende
Photo | Akad. Grad | Vorname | Nachname | Raum | Telefon | |
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Onurcan | Bektas | 033 | – | |||
Clara | Donat | – | – | |||
Fabian | Drexel | – | – | |||
Emily | Eichenlaub | – | – | |||
B.Sc. | Maximilian | Hofacker | 307 | – | ||
Elias | Huber | – | – | |||
Jan | Jedryszek | – | – | |||
B.Sc. | Kim Paola | Job | – | – | ||
Diana | Lenski | – | – | |||
Salome | Lomadze | – | – | |||
B.Sc. | Adrian Paul | Misselwitz | 305 | – | ||
B.Sc. | Kaspar | Wachinger | – | – |
Andere Mitarbeiterinnen und Mitarbeiter
Photo | Akad. Grad | Vorname | Nachname | Raum | Telefon | |
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M.Sc. | Swarnavo | Basu | – | – | ||
Evelyn | Packeiser | 037 | +49 89 289-51614 |
Lehrangebot der Arbeitsgruppe
Lehrveranstaltungen mit Beteiligung der Arbeitsgruppe
Titel und Modulzuordnung | |||
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Art | SWS | Dozent(en) | Termine |
Fortgeschrittene statistische Physik eLearning-Kurs Zuordnung zu Modulen: |
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VO | 4 | Alim, K. |
Di, 08:00–10:00, PH 1121 Fr, 10:00–12:00, PH 1121 |
Aktuelle Entwicklungen zur Physik biologischer Netzwerke Zuordnung zu Modulen: |
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PS | 2 | Alim, K. |
Mi, 10:00–12:00, CPA EG.006B Mi, 10:00–12:00, CPA EG.006B sowie einzelne oder verschobene Termine |
Exercise to Continuum Mechanics
eLearning-Kurs Zuordnung zu Modulen: |
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UE | 2 |
Burger, L.
Kienlein, M.
Mirzapour, F.
Quoika, P.
Sustay Martinez, C. … (insgesamt 6)
Leitung/Koordination: Zacharias, M. |
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Übung zu Fortgeschrittene statistische Physik Zuordnung zu Modulen: |
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UE | 2 |
Leitung/Koordination: Alim, K. |
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Journal Club Biological Physics and Morphogenesis
Zuordnung zu Modulen: |
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SE | 2 | Alim, K. |
Do, 13:00–15:00, CPA EG.006B sowie einzelne oder verschobene Termine |
Repetitorium zu Aktuelle Entwicklungen zur Physik biologischer Netzwerke Zuordnung zu Modulen: |
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RE | 2 |
Leitung/Koordination: Alim, K. |
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Tag der Physikerinnen aktuelle Informationen Zuordnung zu Modulen: |
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KO | 0.1 | Alim, K. |
einzelne oder verschobene Termine |
Tutorenseminar zu Fortgeschrittene statistische Physik Diese Lehrveranstaltung ist keinem Modul zugeordnet. |
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SE | 2 | Alim, K. |
Ausgeschriebene Angebote für Abschlussarbeiten an der Arbeitsgruppe
- Active response by adaptation of mechanical properties?
The complex behavior of the giant cell Physarum polycephalum finds its origin in the versatile transformation of liquid cytoplasm to gel-like actin-myosin meshwork making up the tube walls and vice versa. These active mechanics allow the organism to recycle its’ gel-like tubes at its rear and move it in its fluid form to the front, where it grows. Also, responding to stimuli like food, touch, or light, a change in cytoplasm viscosity seems to initiate the response. Yet, what are the mechanical properties of the liquid cytoplasm, and how much do they change upon stimulation? Do the mechanical properties of the cytoplasm change with the location in the cell? The measure of the mechanical properties of cells is challenging, but one can probe their visco-elasticity by tracking injected micron-sized beads - a technique called microrheology. You will measure the mechanical properties of cytoplasm extracts and grown Physarum, and quantify how they change upon stimulation by passive and active microrheology. Task 1: Establish cytoplasm extraction following previous work in the literature. Task 2: Perform passive microrheology on cytoplasmic droplets without and with stimulation (light, food, drugs) and analyze your data quantitatively. Task 3: Establish active microrheology to extract cytoplasm viscosity in different parts of Physarum’s network.
- geeignet als
- Bachelorarbeit Physik
- Themensteller(in): Karen Alim
- Mapping network theory to network function
- Networks exist as our social network, the world wide web, traffic routes but also as flow networks making up the vasculature of animals, plants, fungi and slime moulds. While a lot of measures have been developed to describe networks in general it is not clear how these measures are predicting network function via network architecture. You will quantify physical networks of the slime mould and numerically generated model networks with network theoretic measures. Mapping to slime mould behaviour and model network flow and transport function will allow you to identify predictive network theoretic measures. You will learn network theory, Matlab. Prerequisites: statistical physics. Task 1 Collect network theoretic measures from the literature and Matlab packages Task 2 Apply network theoretic measures on slime mould and model data and map their property onto the network architecture Task 3 Correlate link by link network theoretic measure and flow/transport in the link under inspection to identify measures of predictive power.
- geeignet als
- Bachelorarbeit Physik
- Themensteller(in): Karen Alim
Abgeschlossene und laufende Abschlussarbeiten an der Arbeitsgruppe
- The effect of aversive external conditions on the migration of small plasmodia of Physarum polycephalum
- Abschlussarbeit im Masterstudiengang Physik (Biophysik)
- Themensteller(in): Karen Alim
- Investigating metabolic changes in genetically modified stem cell-derived beta cells.
- Abschlussarbeit im Masterstudiengang Biomedical Engineering and Medical Physics
- Themensteller(in): Karen Alim